Re: [PoC] Improve dead tuple storage for lazy vacuum

Masahiko Sawada <sawada.mshk@gmail.com>

From: Masahiko Sawada <sawada.mshk@gmail.com>
To: John Naylor <john.naylor@enterprisedb.com>
Cc: Nathan Bossart <nathandbossart@gmail.com>, Andres Freund <andres@anarazel.de>, Matthias van de Meent <boekewurm+postgres@gmail.com>, Yura Sokolov <y.sokolov@postgrespro.ru>, PostgreSQL-development <pgsql-hackers@postgresql.org>
Date: 2022-11-21T08:42:34Z
Lists: pgsql-hackers
On Mon, Nov 21, 2022 at 4:20 PM John Naylor
<john.naylor@enterprisedb.com> wrote:
>
>
> On Fri, Nov 18, 2022 at 2:48 PM I wrote:
> > One issue with this patch: The "fanout" member is a uint8, so it can't hold 256 for the largest node kind. That's not an issue in practice, since we never need to grow it, and we only compare that value with the count in an Assert(), so I just set it to zero. That does break an invariant, so it's not great. We could use 2 bytes to be strictly correct in all cases, but that limits what we can do with the smallest node kind.
>
> Thinking about this part, there's an easy resolution -- use a different macro for fixed- and variable-sized node kinds to determine if there is a free slot.
>
> Also, I wanted to share some results of adjusting the boundary between the two smallest node kinds. In the hackish attached patch, I modified the fixed height search benchmark to search a small (within L1 cache) tree thousands of times. For the first set I modified node4's maximum fanout and filled it up. For the second, I set node4's fanout to 1, which causes 2+ to spill to node32 (actually the partially-filled node15 size class as demoed earlier).
>
> node4:
>
> NOTICE:  num_keys = 16, height = 3, n4 = 15, n15 = 0, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       2 |    16 |            16520 |          0 |            3
>
> NOTICE:  num_keys = 81, height = 3, n4 = 40, n15 = 0, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       3 |    81 |            16456 |          0 |           17
>
> NOTICE:  num_keys = 256, height = 3, n4 = 85, n15 = 0, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       4 |   256 |            16456 |          0 |           89
>
> NOTICE:  num_keys = 625, height = 3, n4 = 156, n15 = 0, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       5 |   625 |            16488 |          0 |          327
>
>
> node32:
>
> NOTICE:  num_keys = 16, height = 3, n4 = 0, n15 = 15, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       2 |    16 |            16488 |          0 |            5
> (1 row)
>
> NOTICE:  num_keys = 81, height = 3, n4 = 0, n15 = 40, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       3 |    81 |            16520 |          0 |           28
>
> NOTICE:  num_keys = 256, height = 3, n4 = 0, n15 = 85, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       4 |   256 |            16408 |          0 |           79
>
> NOTICE:  num_keys = 625, height = 3, n4 = 0, n15 = 156, n32 = 0, n128 = 0, n256 = 0
>  fanout | nkeys | rt_mem_allocated | rt_load_ms | rt_search_ms
> --------+-------+------------------+------------+--------------
>       5 |   625 |            24616 |          0 |          199
>
> In this test, node32 seems slightly faster than node4 with 4 elements, at the cost of more memory.
>
> Assuming the smallest node is fixed size (i.e. fanout/capacity member not part of the common set, so only part of variable-sized nodes), 3 has a nice property: no wasted padding space:
>
> node4: 5 + 4+(7) + 4*8 = 48 bytes
> node3: 5 + 3     + 3*8 = 32

IIUC if we store the fanout member only in variable-sized nodes,
rt_node has only count, shift, and chunk, so 4 bytes in total. If so,
the size of node3 (ie. fixed-sized node) is (4 + 3 + (1) + 3*8)? The
size doesn't change but there is 1 byte padding space.

Also, even if we have the node3 a variable-sized node, size class 1
for node3 could be a good choice since it also doesn't need padding
space and could be a good alternative to path compression.

node3         :  5 + 3 + 3*8 = 32 bytes
size class 1 : 5 + 3 + 1*8 = 16 bytes

Regards,

-- 
Masahiko Sawada
Amazon Web Services: https://aws.amazon.com



Commits

  1. radixtree: Fix SIGSEGV at update of embeddable value to non-embeddable.

  2. Get rid of anonymous struct

  3. Teach radix tree to embed values at runtime

  4. Teach TID store to skip bitmap for small numbers of offsets

  5. Use bump context for TID bitmaps stored by vacuum

  6. Fix alignment of stack variable

  7. Use TidStore for dead tuple TIDs storage during lazy vacuum.

  8. Rethink create and attach APIs of shared TidStore.

  9. Fix inconsistent function prototypes with function definitions.

  10. Fix a calculation in TidStoreCreate().

  11. Fix potential integer handling issue in radixtree.h.

  12. Add TIDStore, to store sets of TIDs (ItemPointerData) efficiently.

  13. Fix link error for test_radixtree module on Windows

  14. Blind attempt to fix ODR violations

  15. Fix incorrect format specifier for int64

  16. Fix redefinition of typedefs

  17. Add template for adaptive radix tree

  18. Fix signedness error in 9f225e992 for gcc

  19. Introduce helper SIMD functions for small byte arrays

  20. Optimize vacuuming of relations with no indexes.

  21. Add bound check before bsearch() for performance

  22. Allocate consecutive blocks during parallel seqscans